Graveley, B.R.2008. The Haplo-Spliceo-Transcriptome: Splicing Variations in the Human Population. Trends in Genetics, in press.
Olson, S. Blanchette, M., Park, J.W., Savva, Y., Yeo, G.W., Yeakley, J.M., Rio, D.C. and Graveley, B.R.2007. A Regulator of Dscam Mutually Exclusive Splicing Fidelity. Nature Structural and Molecular Biology, in press.
Alternative Splicing in the Postgenomic Era 2007. Edited by Blencowe, B.J. and Graveley, B.R.Landes Bioscience, in press.
Park, J.W., and Graveley, B.R.2007. Complex Alternative Splicing. in Alternative Splicing in the Postgenomic Era, ed. B.J. Blencowe and B.R. Graveley. in press.
Yang, L., Park, J.W., and Graveley, B.R.2007. Splicing from the Outside In. Molecular Cell 27:861-862.
Palakodeti, D., Smielewska, M., and Graveley, B.R.2006. MicroRNAs from the Planarian Schmidtea mediterranea: A model system for stem cell biology. RNA, 12:1640-1649. Epub 2006 Jul 18.
Black, D.L. and B.R. Graveley. 2006. Splicing Bioinformatics to Biology. Genome Biology, 7:317-320.
Park, J.W. and B.R. Graveley. 2005. The Use of RNA Interference to Dissect the Roles of trans-Acting Factors in Alternative Pre-mRNA Splicing, Methods, 37:341-344.
Graveley, B.R. 2005. Coordinated control of splicing and translation. Nature Structural & Molecular Biology, 12:1022-1023.
Kreahling, J.M. and B.R. Graveley. 2005. The iStem: A long-range RNA secondary structure element required for efficient exon inclusion in the Drosophila Dscam pre-mRNA. Molecular and Cellular Biology, 25:10251-10260.
Graveley, B.R. 2005. Mutually Exclusive Splicing of the Insect Dscam Pre-mRNA Directed by Competing Intronic RNA Secondary Structures. Cell, 123:65-73. See accompanying Preview article by Chris Smith (Cell, 123:1-7).
Celotto, A.M., J.W. Lee, and B.R. Graveley 2005. Exon-specific RNA Interference: A tool to determine the functional relevance of proteins encoded by alternatively spliced mRNAs. Methods in Molecular Biology 309:273-282.
Hertel, K.J. and B.R. Graveley. 2005. RS domains contact the pre-mRNA throughout spliceosome assembly. Trends in Biochemical Sciences, 30:115-118.
Graveley, B.R. 2005. Small molecule control of pre-mRNA splicing. RNA, 11:355-358.
Park, J.W., K. Parisky, A.M. Celotto, R.A. Reenan, and B.R. Graveley. 2004. Identification of Alternative Splicing Regulators by RNA Interference in Drosophila. PNAS, 101:15974-15979.
Philipps, D.L., J.W. Park, and B.R.Graveley. 2004. A computational and experimental approach towards a priori identification of alternative exons. RNA, 10:1838-1844.
Graveley, B.R., A. Kaur, D. Gunning, S.L. Zipursky, L. Rowen, and J. Clemens. 2004. Organization and Evolution of the Dipteran and Hymenopteran Dscam genes. RNA, 10:1499-1506.
Graveley, B.R. 2004. A protein interaction domain that contacts RNA in the pre-spliceosome. Molecular Cell, 13:302-304.
Celotto, A.M. and Graveley, B.R. 2004. Using SSCP (Single Strand Conformational Polymorphism) Gel Electrophoresis to analyze mutually exclusive alternative splicing. in Methods in Molecular Biology - mRNA Processing and Metabolism: Methods and Protocols . D. Schoenberg, Ed., Humana Press. vol. 257, pp. 65-73.
Celotto, A.M. and Graveley, B.R. 2004. RNAi of mRNA Processing Factors in Drosophila S2 Cells. in Methods in Molecular Biology - mRNA Processing and Metabolism: Methods and Protocols . D. Schoenberg, Ed., Humana Press. vol. 257, pp. 245-254.
Kreahling, J. and B.R. Graveley. 2004. The Origins and Implications of Aluternative Splicing. Trends in Genetics, 20:1-4.
Graveley, B.R and Hertel, K.J. 2003. SR proteins. Encyclopedia of the Human Genome. (Nature Publication Group), in press.
Philipps, D., Celotto, A.M., Wang, Q.Q., Tarng, R. and Graveley, B.R. 2003. Arginine/Serine dipeptides are sufficient to constitute a splicing activation domain. Nucleic Acids Research, 31:6502-6508.
Bakshi, A., Lam, B.L., Ekinci, F.Y., Webb, J., Graveley, B.R. , Hertel, K.J. 2003. Enhancer dependent 5' splice site control of fruitless pre-mRNA splicing. J. Biol. Chem, 278:22740-22747 .
Szymczyna, B.R., Bowman, J., McCracken, S., Pineda-Lucena, A., Lu, Y., Cox, B., Lambermon, M., Graveley, B.R. , Arrowsmith, C.H., and Blencowe, B.J. 2003. Structure and function of the PWI motif: a novel nucleic acid binding domain that facilitates pre-mRNA processing. Genes and Development, 17:461-475.
Graveley, B.R. 2002. Sex, AGility, and the Regulation of Alternative Splicing. Cell, 109:409-412.
Celotto, A.M., and Graveley, B.R . 2002. Exon-specific RNAi: A tool for dissecting the functional relevance of alternative splicing. RNA 8:718-724.
Rowen, L., Young, J., Birditt, B., Kaur, A., Madan, A., Philipps, D.L., Qin, S., Minx, P., Wilson, R. K., Hood, L., and Graveley, B.R . 2001. Analysis of the human neurexin genes: Alternative splicing and the generation of protein diversity. Genomics, 79:587-597.
Shepard, J., Reick, M., Olson, S., and Graveley, B.R. 2002. Characterization of U2AF26, a splicing factor related to U2AF35. Mol. Cell. Biol., 22:221-230.
Graveley, B.R . 2001. L'épissage alternatif: diversifier le protéome. Biofutur. 216:39-43.
Celotto, A.M. and Graveley, B.R. 2001. Alternative splicing of the Drosophila Dscam pre-mRNA is both temporally and spatially regulated. Genetics, 159:599-608.
Graveley, B.R. , Hertel, K.J. and Maniatis, T. 2001. The role of U2AF65 and U2AF35 in enhancer-dependent splicing. RNA, 7:806-18.
Graveley, B.R . 2001. Alternative splicing: increasing diversity in the proteomic world. Trends in Genetics, 17:100-107.
Graveley, B.R. 2000 Sorting out the complexity of SR protein functions. RNA, 6:1197-1211.
Graveley, B.R. , K.J. Hertel, and T. Maniatis. 1999. SR proteins are "locators" of the RNA splicing machinery. Current Biology, 9:R6-R7.
Graveley, B.R. , K.J. Hertel, and T. Maniatis. 1998. A systematic analysis of the factors that determine the strength of pre-mRNA splicing enhancers. EMBO J., 17:6747-6756.
Graveley, B.R . and T. Maniatis. 1998. Arginine/serine-rich domains of SR proteins can function as activators of pre-mRNA splicing. Molecular Cell, 1:765-771.
