• W. S. Hlavacek, J. R. Faeder, M. L. Blinov, R. G. Posner, M. Hucka and W. Fontana (2006) Rules for modeling signal-transduction systems. Sci. STKE 2006, re6. [ PubMed | doi:10.1126/stke.3442006re6 | pdf]
• M. L. Blinov, J. Yang, J. R. Faeder and W. S. Hlavacek (2006) Depicting signaling cascades. Nat. Biotechnol. 24, 137-138. [PubMed | pdf]
• M. L. Blinov R. Faeder, B. Goldstein and W. S. Hlavacek (2006) A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity. BioSystems 83, 136-151 [PubMed | doi:10.1016/j.biosystems.2005.06.014 | pdf]
• M. L. Blinov, J. Yang, J. R. Faeder and W. S. Hlavacek (2006) Graph theory for rule-based modeling of biochemical networks. To appear in Transactions on Computational Systems Biology in the series Lect. Notes Comput. Sci. Available in Proc. BioCONCUR 2005 (B. Mishra and C. Priami, Editors), pp. 1-19.  Presented at BioCONCUR 2005, San Francisco, CA, August 27, 2005.  [pdf]
• M. L. Blinov, J. R. Faeder, J. Yang, B. Goldstein and W. S. Hlavacek (2005) `On-the-fly' or `generate-first' modeling? Nat. Biotechnol. 23, 1344-1345. [PubMed | pdf]
• J. R. Faeder*, M. L. Blinov*, B. Goldstein and W. S. Hlavacek (2005) Rule-based modeling of biochemical networks. Complexity 10, 22-41. [Abstract | pdf]
  * These two authors contributed equally to the manuscript
• J. R. Faeder, M. L. Blinov, B. Goldstein and W. S. Hlavacek (2005) Combinatorial complexity and dynamical restriction of network flows in signal transduction. Syst. Biol. 2, 5-15. [Abstract | pdf]
• J. R. Faeder, M. L. Blinov and W. S. Hlavacek (2005) Graphical rule-based representation of signal-transduction networks. In Proc. 2005 ACM Symp. Appl. Computing (L. M. Liebrock, Editor) ACM Press, New York, NY, pp. 133-140. Presented at The 20th ACM Symposium on Applied Computing, Santa Fe, NM, March 13-17, 2005. [doi.acm.org/10.1145/1066677.1066712 | pdf]
• M. Blinov, M. Briskin, Y. Yomdin (2005) Local Center Conditions for Abel Equation and Cyclicity of it Zero Solution. In Complex analysis and dynamical systems II, Contemp. Math. 382, 65-82. Amer. Math. Soc., Providence, RI [pdf]
• M. L. Blinov, J. R. Faeder, B. Goldstein and W. S. Hlavacek (2004) BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. Bioinformatics 20, 3289-3291. [PubMed | doi:10.1093/bioinformatics/bth378 | BioNetGen software | pdf]
• J. R. Faeder, W. S. Hlavacek, I. Reischl, M. L. Blinov, H. Metzger, A. Redondo, C. Wofsy and B. Goldstein (2003) Investigation of early events in FcεRI-mediated signaling using a detailed mathematical model. J. Immunol. 170, 3769-3781. [PubMed | Full Text | pdf]
• W. S. Hlavacek, J. R. Faeder, M. L. Blinov, A. S. Perelson and B. Goldstein (2003) The complexity of complexes in signal transduction. Biotechnol. Bioeng. 84, 783-794. [PubMed | pdf]
• M. Blinov, N. Roytvarf, Y. Yomdin (2003) Center and Moment Conditions for Rational Abel Equation. Funct. Diff. Equations 10, 95-106 [pdf]
• M. Blinov, N. Zehavi, S. Black (2003) A Computer Motivated Study of Problems in Number Theory. The International Journal of Computer Algebra in Mathematics Education 9, 315-330 [pdf]
• B. Goldstein, J. R. Faeder, W. S. Hlavacek, M. L. Blinov, A. Redondo and C. Wofsy (2002) Modeling the early signaling events mediated by FcεRI. Mol. Immunol. 38, 1213-1219. [PubMed | pdf]
• M. Blinov, Y. Yomdin (2001) Center and Composition Conditions for Abel Differential Equation, and rational curves. Qualitative Theory of Dynamical Systems 2, 111-127 (Postscript)
• M. Blinov, Y. Yomdin. (1999) Generalized center conditions and multiplicities for polynomial Abel equations of small degrees. Nonlinearity 12, 1013-1028. [pdf]